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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-BC-1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps BC-1_a08
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - BC-1 [ View Map Set Info ]
Map Name: BC-1_a08
Map Start: 0.00 cM
Map Stop: 51.30 cM
Features by Type:
20 SSR
20 Total

Map Features

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Items 1 to 20 of 20.
Groundnut - BC-1 - BC-1_a08
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
IPAHM540_A SSR 51.30 No other positions
IPAHM229_A SSR 50.70 No other positions
TC1E05_A SSR 48.10 No other positions
Ah3TC22C01_A SSR 41.70 No other positions
Ad90F2_A SSR 39.20 No other positions
TC9F10_A SSR 39.20 No other positions
TC6H03_A1 SSR 34.90 No other positions
TC6H03_A SSR 34.90 No other positions
Ah3TC21D06_1_A SSR 30.90 No other positions
RN18H05_A SSR 29.30 No other positions
RM5G08_A SSR 26.40 No other positions
Ah3TC23H09_A SSR 19.80 No other positions
Seq2G03_A SSR 13.80 No other positions
RN22A12_A SSR 13.80 No other positions
Seq3A08_A SSR 13.20 No other positions
TC7A02_A SSR 10.20 No other positions
TC3B04_A SSR 10.20 No other positions
RM7E04_A SSR 2.40 No other positions
TC3B05_A SSR 2.40 No other positions
TC9B08_A SSR 0.00 No other positions