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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-combined_corresponding_a07
(Reference Set)
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Correspondences
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Maps RIL-7_LG17
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - combined_corresponding_a07 [ View Map Set Info ]
Map Name: RIL-7_LG17
Map Start: 0.00 cM
Map Stop: 15.90 cM
Features by Type:
4 SSR
4 Total

Map Features

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Items 1 to 4 of 4.
Groundnut - combined_corresponding_a07 - RIL-7_LG17
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PM204 SSR 15.90 Groundnut - RIL-10 - RIL-10_LG07 PM204 SSR 17.80 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG17 PM204 SSR 23.80 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG07 PM204 SSR 118.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - RIL-2_LG7 PM204 SSR 118.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - RIL-10_LG7 PM204 SSR 27.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - RIL-8_LG3 PM204 SSR 8.10 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a07 PM204 SSR 166.52 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG07 PM204 SSR 177.19 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - BC-1_a07 PM204 SSR 30.00 (cM) Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG07 PM204 SSR 65.60 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - RIL-9_LG7 PM204 SSR 18.60 (cM) Automated name-based View Maps
Groundnut - RIL-8 - RIL-8_LG03 PM204 SSR 16.10 (cM) Automated name-based View Maps
TC9C08 SSR 14.40 Groundnut - RIL-7 - RIL-7_LG17 TC9C08 SSR 22.30 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a07 TC9C08 SSR 142.85 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG17 TC9C08 SSR 0.00 (cM) Automated name-based View Maps
TC9H08 SSR 14.40 Groundnut - Ref. consensus genetic map - a08 TC9H08 SSR 91.79 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a07 TC9H08 SSR 142.85 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG10 TC9H08 SSR 86.63 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - BC-1_a07 TC9H08 SSR 26.50 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG17 TC9H08 SSR 21.60 (cM) Automated name-based View Maps
Groundnut - RIL-8 - RIL-8_LG03 TC9H08 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a07 - RIL-8_LG3 TC9H08 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG08 TC9H08 SSR 89.60 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG17 TC9H08 SSR 3.60 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a08 - RIL-2_LG8 TC9H08 SSR 89.60 (cM) Automated name-based View Maps
seq15B4-2 SSR 0.00 Groundnut - Ref. consensus genetic map - a07 seq15B4-2 SSR 109.31 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG17 seq15B4-2 SSR 0.00 (cM) Automated name-based View Maps