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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Groundnut-combined_corresponding_b02
(Reference Set)
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Correspondences
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Maps RIL-9_LG21
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - combined_corresponding_b02 [ View Map Set Info ]
Map Name: RIL-9_LG21
Map Start: 0.00 cM
Map Stop: 22.00 cM
Features by Type:
3 SSR
3 Total

Map Features

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Items 1 to 3 of 3.
Groundnut - combined_corresponding_b02 - RIL-9_LG21
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TC9F04 SSR 22.00 Groundnut - RIL-10 - RIL-10_LG21 TC9F04 SSR 31.20 (cM) Automated name-based View Maps
Groundnut - Consensus_Biotic - LG02 TC9F04 SSR 42.74 (cM) Automated name-based View Maps
Groundnut - RIL-7 - RIL-7_LG03 TC9F04 SSR 53.30 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG03 TC9F04 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_a08 - RIL-2_LG8 TC9F04 SSR 117.60 (cM) Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG10 TC9F04 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - a08 TC9F04 SSR 115.02 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-6_LG3 TC9F04 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG02 TC9F04 SSR 48.20 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG08 TC9F04 SSR 117.60 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG10 TC9F04 SSR 38.43 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-4_LG2 TC9F04 SSR 48.20 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 TC9F04 SSR 130.21 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-3_LG10 TC9F04 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-7_LG3 TC9F04 SSR 43.60 (cM) Automated name-based View Maps
Groundnut - RIL-9 - RIL-9_LG02 TC9F04 SSR 55.00 (cM) Automated name-based View Maps
GM2196 SSR 19.40 Groundnut - RIL-9 - RIL-9_LG02 GM2196 SSR 55.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 GM2196 SSR 131.21 (cM) Automated name-based View Maps
Groundnut - RIL-10 - RIL-10_LG21 GM2196 SSR 22.90 (cM) Automated name-based View Maps
seq2D12B SSR 0.00 Groundnut - RIL-10 - RIL-10_LG21 seq2D12B SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-3 - RIL-3 _LG11 seq2D12B SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-5_LG2 seq2D12B SSR 38.50 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b02 seq2D12B SSR 134.63 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG02 seq2D12B SSR 32.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b02 - RIL-4_LG2 seq2D12B SSR 32.00 (cM) Automated name-based View Maps
Groundnut - RIL-2 - RIL-2_LG19 seq2D12B SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG02 seq2D12B SSR 38.50 (cM) Automated name-based View Maps
Groundnut - Consensus_Abiotic - LG19 seq2D12B SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Consensus_Biotic - LG02 seq2D12B SSR 29.91 (cM) Automated name-based View Maps