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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Groundnut-combined_corresponding_b10
(Reference Set) 		Groundnut-combined_corresponding_b10
Min.
Correspondences
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Maps RIL-7_LG7 RIL-6_LG7
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
SSR
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
Synteny
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Groundnut - combined_corresponding_b10 [ View Map Set Info ]
Map Name: RIL-7_LG7
Map Start: 0.00 cM
Map Stop: 45.90 cM
Features by Type:
8 SSR
8 Total

Map Features

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Items 1 to 8 of 8.
Groundnut - combined_corresponding_b10 - RIL-7_LG7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
seq4E10-2 SSR 0.00 No other positions
EE_16 SSR 7.50 Groundnut - Ref. consensus genetic map - b10 EE_16 SSR 65.43 (cM) Automated name-based View Maps
GA121 SSR 10.80 Groundnut - combined_corresponding_b10 - RIL-6_LG7 GA121 SSR 24.40 (cM) Automated name-based View Maps
TC4E05 SSR 24.00 Groundnut - combined_corresponding_b10 - RIL-4_LG12 TC4E05 SSR 19.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-5_LG12 TC4E05 SSR 19.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - BC-1_b10 TC4E05 SSR 7.00 (cM) Automated name-based View Maps
GA156 SSR 27.40 Groundnut - RIL-7 - RIL-7_LG07 GA156 SSR 25.40 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 GA156 SSR 44.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-6_LG7 GA156 SSR 11.40 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG07 GA156 SSR 9.70 (cM) Automated name-based View Maps
AC2B04 SSR 27.40 Groundnut - combined_corresponding_b10 - RIL-6_LG7 AC2B04 SSR 11.40 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - BC-1_b10 AC2B04 SSR 10.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-9_LG16 AC2B04 SSR 10.92 (cM) Automated name-based View Maps
TC11A02 SSR 29.10 Groundnut - RIL-7 - RIL-7_LG07 TC11A02 SSR 35.60 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-6_LG7 TC11A02 SSR 12.40 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 TC11A02 SSR 42.55 (cM) Automated name-based View Maps
Groundnut - RIL-6 - RIL-6_LG07 TC11A02 SSR 19.50 (cM) Automated name-based View Maps
seq7H06 SSR 45.90 Groundnut - Consensus_Biotic - LG12 seq7H06 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - Ref. consensus genetic map - b10 seq7H06 SSR 16.70 (cM) Automated name-based View Maps
Groundnut - RIL-5 - RIL-5_LG12 seq7H06 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - RIL-4 - RIL-4_LG12 seq7H06 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-4_LG12 seq7H06 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - RIL-5_LG12 seq7H06 SSR 0.00 (cM) Automated name-based View Maps
Groundnut - combined_corresponding_b10 - BC-1_b10 seq7H06 SSR 18.40 (cM) Automated name-based View Maps