Additional Material for Varshney et al. 2013

 

Rajeev K. Varshney, Mahendar Thudi, Spurthi N. Nayak, Pooran M. Gaur, Junichi Kashiwagi, Lakshmanan Krishnamurthy, Deepa Jaganathan, Jahnavi Koppolu, Abhishek Bohra, Shailesh Tripathi, Abhishek Rathore, Aravind K. Jukanti, Veera Jayalakshmi, Anilkumar Vemula, S.J. Singh, Mohammad Yasin, M.S. Sheshshayee, K.P. Viswanatha (2013) Genetic dissection of drought tolerance in chickpea (Cicer arietinum). Theoretical and Applied Genetics DOI: 10.1007/s00122-013-2230-6.


This page presents the following in addition to supplemental materials of the above mentioned article (ESM Table S1 - ESM Table S12 and ESM Figure S1- ESM Figure S2)

The consensus genetic map with 352 loci distributed on eight linkage groups of chickpea, spanning 779.31cM, developed by combining two intra-specific genetic maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261). The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group.

Correspondence of linkage group (LG) 1 of consensus map with LG1 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 2 of consensus map with LG2 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 3 of consensus map with LG3 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 4 of consensus map with LG4 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 5 of consensus map with LG 5 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 6 of consensus map with LG6 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 7 of consensus map with LG7 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Correspondence of linkage group (LG) 8 of consensus map with LG8 of Thudi et al. (2011) and two intra-specific maps (ICC 4958 × ICC 1882 and ICC 283 × ICC 8261).

Electronic Supplementary Tables

ESM Table S1: Summary of traits evaluated at different locations and seasons on both RIL populations

ESM Table S2: Number of polymorphic markers genotyped and mapped on two intra-specific genetic maps

ESM Table S3: Mean performance of the parents, variation in RILs, broad sense heritability across seasons and locations in ICCRIL03 (ICC 4958 × ICC 1882)

ESM Table S4: Mean performance of the parents, variation in RILs, broad sense heritability across seasons and locations in ICCRIL04 (ICC 283 × ICC 8261)

ESM Table S5: Analysis of variance for root, morphological, phenological, yield and yield related, transpiration efficiency related traits on ICCRIL03 (ICC 4958 × ICC 1882)

ESM Table S6: Analysis of variance for root, morphological, phenological, yield and yield related traits on ICCRIL04 (ICC 283 × ICC 8261)

ESM Table S7: Summary of combined correlations for different drought component traits

a. Combined correlations among root traits based on phenotyping of ICCRIL03 during post-rainy 2005-06 and 2007-08 and ICCRIL04 during post-rainy 2006-07 and 2009-10

b. Combined correlations among morphological, phenological, transpiration efficiency related, yield and yield related traits phenotyped on ICCRIL03 during post-rainy 2008-09 at Patancheru, Nandyal, Sehore and Durgapura

c. Combined correlations among morphological, phenological, transpiration efficiency related, yield and yield related traits phenotyped on ICCRIL03 during post-rainy 2009-10 at Patancheru, Nandyal, Sehore, Hiriyur and Durgapura

d. Combined correlations among morphological phenological transpiration efficiency related, yield and yield related traits phenotyped on ICCRIL04 during post-rainy 2010-11 at Patancheru, Nandyal, Sehore and Durgapura

ESM Table S8: Summary of main effect QTLs (M-QTLs) for various drought tolerance related traits identified using QTL Cartographer on ICCRIL03 and ICCRIL04

ESM Table S9: Summary of main effect QTLs (M-QTLs) for various drought tolerance related traits identified using QTLNetwork on ICCRIL03 and ICCRIL04

ESM Table S10: Summary of epistatic QTLs for various drought tolerance related traits identified using QTLNetwork on ICCRIL03 (ICC 4958 × ICC 1882) and ICCRIL04 (ICC 283 × ICC 8261)

ESM Table S11: Two and three loci epistatic interactions identified by Genotype Matrix Mapping (GMM) on ICCRIL03 (ICC 4958 × ICC 1882)

ESM Table S12: Two and three loci epistatic interactions identified by Genotype Matrix Mapping (GMM) on ICCRIL04 (ICC 283 × ICC 8261)


Electronic Supplementary Figures

ESM Figure S1: The inter-specific genetic map and QTL maps of chickpea constructed based on recombinant inbred line (RIL) mapping population ICC 4958 × ICC 1882 with 241 loci spanning 621.51cM
The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group

ESM Figure S2: The interspecific genetic map and QTL maps of chickpea constructed based on recombinant inbred line (RIL) mapping population ICC 283 × ICC 8261 with 168 loci spanning 533.06 cM.
The genetic distance in cM is represented on left hand side and the markers names are on the right hand side of the linkage group